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biolab / orange3-single-cell

🍊🔬 Orange add-on for gene expression of single cell data
https://singlecell.biolab.si/
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Load Data: incorrect assignment of source file #389

Closed M-860307 closed 3 months ago

M-860307 commented 2 years ago

What's wrong? <In the t-SNE interface after loading two matrix.mtx data for scRNA analyses, the t-SNE interface could not colors the cells according to the source. When we colored the cells using the source choice, the t-SNE figure still exhibits one color, and the legend only shows one matrix.mtx data. >

How can we reproduce the problem? <In the t-SNE interface after loading two matrix.mtx data for scRNA analyses, the t-SNE interface could not colors the cells according to the source. When we colored the cells using the source choice, the t-SNE figure still exhibits one color, and the legend only shows only one matrix.mtx data. >

What's your environment?

ajdapretnar commented 2 years ago

Thank you for submitting the report, but we'll need more details. Could you provide a screenshot of the workflow, or even better, a minimal reproducible example with the data and workflow attached?

M-860307 commented 2 years ago

图片1 As shown in the attached picture, we uploaded two matrix.mtx data and used the tSNE widget for visualization, but it could only visualize one matrix data. Many thanks for your help. We are looking forward to your reply.

M-860307 commented 2 years ago

Thank you for submitting the report, but we'll need more details. Could you provide a screenshot of the workflow, or even better, a minimal reproducible example with the data and workflow attached? As shown in the attached picture, we uploaded two matrix.mtx data and used the tSNE widget for visualization, but it could only visualize one matrix data. Many thanks for your help. We are looking forward to your reply. 图片1

ajdapretnar commented 2 years ago

I'd say it's a bug in Load Data widget, which incorrectly assigns source data. Moving the issue to the corresponding repository.

M-860307 commented 2 years ago

I'd say it's a bug in Load Data widget, which incorrectly assigns source data. Moving the issue to the corresponding repository.

Thanks very much for your help. Could you please tell us how we could solve this problem in the next step?

ajdapretnar commented 2 years ago

If you know how to fix the bug in the Load Data widget, then we are happy to accept a pull request. If not, someone from the core team who works with sc data needs to check this and submit a fix. @JakaKokosar @pavlin-policar ?

M-860307 commented 2 years ago

If you know how to fix the bug in the Load Data widget, then we are happy to accept a pull request. If not, someone from the core team who works with sc data needs to check this and submit a fix. @JakaKokosar @pavlin-policar ?

Yes, as you say, we do not know how to fix the bug in the Load Data widget. So would you please like provide us a fix or tell us other manner to solve this problem?

M-860307 commented 2 years ago

If you know how to fix the bug in the Load Data widget, then we are happy to accept a pull request. If not, someone from the core team who works with sc data needs to check this and submit a fix. @JakaKokosar @pavlin-policar ?

Well, we still did not receive your reply. Would you please like tell us how to solve this problem? We are clinical doctors and the Code is very difficult for us. The best way might be that the team could provide the correct version to download for installing. Many thanks for your help.