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biolab / orange3

🍊 :bar_chart: :bulb: Orange: Interactive data analysis
https://orangedatamining.com
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Orange does not start #3938

Closed palste closed 5 years ago

palste commented 5 years ago
Orange version

orange3-3.22.0

Expected behavior

orange3 starting

Actual behavior

Orange not starting

Steps to reproduce the behavior

Into Cloudera VM terminal:

Successfully installed AnyQt-0.0.10 keyrings.alt-3.1.1 openTSNE-0.3.8 orange3-3.22.0 pynndescent-0.3.0 pyqtgraph-0.10.0 python-louvain-0.13 serverfiles-0.3.0

QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-cloudera' glibc detected /home/cloudera/anaconda3/bin/python: double free or corruption (out): 0x00007ffea6e47510 *** ======= Backtrace: ========= /lib64/libc.so.6(+0x3513475e5e)[0x7fd75a75ee5e] /lib64/libc.so.6(+0x3513478cf0)[0x7fd75a761cf0] /usr/lib64/libLLVM-3.6-mesa.so(_ZN4llvm23SmallVectorTemplateBaseINS_15LayoutAlignElemELb0EE4growEm+0xc1)[0x7fd73093a1d1] /usr/lib64/libLLVM-3.6-mesa.so(_ZN4llvm15SmallVectorImplINS15LayoutAlignElemEEaSERKS2+0xe7)[0x7fd73093a387] /home/cloudera/anaconda3/lib/python3.7/site-packages/llvmlite/binding/libllvmlite.so(+0x7ed8fb)[0x7fd71f37c8fb] /home/cloudera/anaconda3/lib/python3.7/site-packages/llvmlite/binding/libllvmlite.so(+0x7ede35)[0x7fd71f37ce35] /home/cloudera/anaconda3/lib/python3.7/site-packages/llvmlite/binding/libllvmlite.so(+0xd93213)[0x7fd71f922213] /home/cloudera/anaconda3/lib/python3.7/site-packages/llvmlite/binding/libllvmlite.so(+0x318c5c)[0x7fd71eea7c5c] /home/cloudera/anaconda3/lib/python3.7/site-packages/llvmlite/binding/libllvmlite.so(LLVMPY_CreateMCJITCompiler+0x2b)[0x7fd71eea7cf7] /home/cloudera/anaconda3/lib/python3.7/lib-dynload/../../libffi.so.6(ffi_call_unix64+0x4c)[0x7fd753c3dec0] /home/cloudera/anaconda3/lib/python3.7/lib-dynload/../../libffi.so.6(ffi_call+0x22d)[0x7fd753c3d87d] /home/cloudera/anaconda3/lib/python3.7/lib-dynload/_ctypes.cpython-37m-x86_64-linux-gnu.so(_ctypes_callproc+0x2ce)[0x7fd753e53f7e] /home/cloudera/anaconda3/lib/python3.7/lib-dynload/_ctypes.cpython-37m-x86_64-linux-gnu.so(+0x139b4)[0x7fd753e549b4]

ales-erjavec commented 5 years ago

https://github.com/biolab/orange3/blob/master/Orange/__init__.py#L51 is probably the culprit. But it is not clear if the RTLD_GLOBAL in that line is the cause or if loading the libgl is sufficient to cause this, since it is known that mesa (at least some versions) forces llvm symbols into the global namespace.

https://bugs.freedesktop.org/show_bug.cgi?id=93103 https://root-forum.cern.ch/t/llvm-collision-with-opengl-in-centos7/21979

palste commented 5 years ago

So no chance for now in this environment. Thank anyway