Closed pkstys closed 1 year ago
I can confirm the issue also on Linux.
Did you process your files differently? The working model seems to be build on the raw data, while for the non-working one it seems that you used PCA somewhere. Can you confirm? Thanks!
I get:
Traceback (most recent call last):
File "/home/marko/dev/orange3/Orange/widgets/model/owloadmodel.py", line 71, in browse_file
self.open_file()
File "/home/marko/dev/orange3/Orange/widgets/model/owloadmodel.py", line 87, in open_file
model = pickle.load(f)
File "/home/marko/dev/orange3/Orange/data/variable.py", line 417, in __hash__
return hash((self.name, var.name, type(self), var._compute_value))
File "/home/marko/dev/orange3/Orange/data/util.py", line 102, in __hash__
return hash((type(self), self.compute_shared, self.variable))
AttributeError: 'ComputeValueProjector' object has no attribute 'compute_shared'
which to me points to PCA or manifold learning.
I don't recall but it is possible. I will re-run with vs w/o PCA pre-processing on exactly the same dataset and let you know.
I should mention that i occasionally see this error (or at least AN exception not sure if it's the same) with a blank project containing only a Load Model widget that i dbl-click, even before selecting a pickle file.
On Nov 17, 2022, at 4:41 AM, Marko Toplak @.***> wrote:
I can confirm the issue also on Linux.
Did you process your files differently? The working model seems to be build on the raw data, while for the non-working one it seems that you used PCA somewhere. Can you confirm? Thanks!
ā Reply to this email directly, view it on GitHub https://github.com/biolab/orange3/issues/6206#issuecomment-1318511363, or unsubscribe https://github.com/notifications/unsubscribe-auth/A4HJKKZN7WFCXYSM2FS6RRTWIYKXPANCNFSM6AAAAAASCVCPYM. You are receiving this because you authored the thread.
Hi Marko:
I ran the exact same training on a dataset, one with PCA pre-processing, one without. Both raised exceptions on model reload in a new project with only a Model Load widget:
https://www.dropbox.com/s/8upbeuqw7w6xdbp/orangebug2.zip?dl=0 https://www.dropbox.com/s/8upbeuqw7w6xdbp/orangebug2.zip?dl=0
so it does not seem to be a PCA issue. Hope this helps. Let me know if you want me to try out anything else.
Best Peter
On Nov 17, 2022, at 4:42 AM, Marko Toplak @.***> wrote:
I get:
Traceback (most recent call last): File "/home/marko/dev/orange3/Orange/widgets/model/owloadmodel.py", line 71, in browse_file self.open_file() File "/home/marko/dev/orange3/Orange/widgets/model/owloadmodel.py", line 87, in open_file model = pickle.load(f) File "/home/marko/dev/orange3/Orange/data/variable.py", line 417, in hash return hash((self.name, var.name, type(self), var._compute_value)) File "/home/marko/dev/orange3/Orange/data/util.py", line 102, in hash return hash((type(self), self.compute_shared, self.variable)) AttributeError: 'ComputeValueProjector' object has no attribute 'compute_shared'```
which to me points to PCA or manifold learning. ā Reply to this email directly, view it on GitHub https://github.com/biolab/orange3/issues/6206#issuecomment-1318512270, or unsubscribe https://github.com/notifications/unsubscribe-auth/A4HJKKY27GV2DCX5LXDUUGDWIYK2PANCNFSM6AAAAAASCVCPYM. You are receiving this because you authored the thread.
Hi Marko,
thanks very much for fixing this in 3.34, greatly appreciated.
Here is a crash I experienced doing Louvain clustering. Looking at the crash log I suspect the problem is deep inside python and not something you can fix, but i thought iād pass it on anyway.
All the best Peter.
On Nov 17, 2022, at 4:41 AM, Marko Toplak @.***> wrote:
I can confirm the issue also on Linux.
Did you process your files differently? The working model seems to be build on the raw data, while for the non-working one it seems that you used PCA somewhere. Can you confirm? Thanks!
ā Reply to this email directly, view it on GitHub https://github.com/biolab/orange3/issues/6206#issuecomment-1318511363, or unsubscribe https://github.com/notifications/unsubscribe-auth/A4HJKKZN7WFCXYSM2FS6RRTWIYKXPANCNFSM6AAAAAASCVCPYM. You are receiving this because you authored the thread.
Process: Python [69228] Path: /Applications/Orange3.app/Contents/MacOS/PythonApp Identifier: si.biolab.orange Version: 3.34.0 (3.34.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: Python [69228] User ID: 501
Date/Time: 2022-12-16 11:10:14.762 -0700 OS Version: Mac OS X 10.14.6 (18G103) Report Version: 12 Anonymous UUID: F1EE18DB-1661-98B8-E3A6-D93C0B42532A
Time Awake Since Boot: 1500000 seconds
System Integrity Protection: enabled
Crashed Thread: 3
Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_PROTECTION_FAILURE at 0x000000010d1e7000 Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Bus error: 10 Termination Reason: Namespace SIGNAL, Code 0xa Terminating Process: exc handler [69228]
VM Regions Near 0x10d1e7000:
VM_ALLOCATE 00000001071e7000-000000010d1e7000 [ 96.0M] rw-/rwx SM=PRV
--> TEXT 000000010d1e7000-000000010d1fb000 [ 80K] r-x/rwx SM=COW /Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
DATA 000000010d1fb000-000000010d1ff000 [ 16K] rw-/rwx SM=COW /Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
Thread 0:: Dispatch queue: com.apple.main-thread 0 libopenblas64_.0.dylib 0x0000000105d6e68d .L13_19 + 365 1 ??? 0x0000000000000003 0 + 3
Thread 1: 0 libopenblas64_.0.dylib 0x0000000105d6e5b2 .L13_19 + 146
Thread 2: 0 libopenblas64_.0.dylib 0x0000000105d6c70d .L12_19 + 365
Thread 3 Crashed: 0 libopenblas64_.0.dylib 0x0000000105d72a0b dgemm_oncopyHASWELL + 267 1 libopenblas64.0.dylib 0x0000000103182f42 innerthread + 1474 2 libopenblas64.0.dylib 0x000000010336d41c blas_thread_server + 684 3 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 4: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libopenblas.0.dylib 0x00000001103d070f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 5: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libopenblas.0.dylib 0x00000001103d070f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 6: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libopenblas.0.dylib 0x00000001103d070f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 7:: com.apple.CFSocket.private 0 libsystem_kernel.dylib 0x00007fff7101461a select + 10 1 com.apple.CoreFoundation 0x00007fff44fb12d2 CFSocketManager + 635 2 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 3 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 4 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 8:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff7100d22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7100d76c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff44f8394e CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff44f82ebc CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff44f8261e CFRunLoopRunSpecific + 455 5 com.apple.AppKit 0x00007fff425814a2 _NSEventThread + 175 6 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 8 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 9: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 org.python.python 0x00000001027915d6 PyThread_acquire_lock_timed + 454 3 _queue.cpython-39-darwin.so 0x000000011dbfb57e _queue_SimpleQueue_get_impl + 526 4 _queue.cpython-39-darwin.so 0x000000011dbfb126 _queue_SimpleQueue_get + 198 5 org.python.python 0x00000001026a0fed cfunction_vectorcall_FASTCALL_KEYWORDS + 125 6 org.python.python 0x000000010273ad3c call_function + 732 7 org.python.python 0x0000000102738318 _PyEval_EvalFrameDefault + 25880 8 org.python.python 0x0000000102662c58 function_code_fastcall + 104 9 org.python.python 0x00000001027388b9 _PyEval_EvalFrameDefault + 27321 10 org.python.python 0x0000000102662c58 function_code_fastcall + 104 11 org.python.python 0x000000010273ad3c call_function + 732 12 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 13 org.python.python 0x0000000102662c58 function_code_fastcall + 104 14 org.python.python 0x000000010273ad3c call_function + 732 15 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 16 org.python.python 0x0000000102662c58 function_code_fastcall + 104 17 org.python.python 0x0000000102664ce2 method_vectorcall + 274 18 org.python.python 0x00000001027e0016 t_bootstrap + 70 19 org.python.python 0x0000000102791229 pythread_wrapper + 25 20 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 21 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 22 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 10: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 org.python.python 0x00000001027915d6 PyThread_acquire_lock_timed + 454 3 _queue.cpython-39-darwin.so 0x000000011dbfb57e _queue_SimpleQueue_get_impl + 526 4 _queue.cpython-39-darwin.so 0x000000011dbfb126 _queue_SimpleQueue_get + 198 5 org.python.python 0x00000001026a0fed cfunction_vectorcall_FASTCALL_KEYWORDS + 125 6 org.python.python 0x000000010273ad3c call_function + 732 7 org.python.python 0x0000000102738318 _PyEval_EvalFrameDefault + 25880 8 org.python.python 0x0000000102662c58 function_code_fastcall + 104 9 org.python.python 0x00000001027388b9 _PyEval_EvalFrameDefault + 27321 10 org.python.python 0x0000000102662c58 function_code_fastcall + 104 11 org.python.python 0x000000010273ad3c call_function + 732 12 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 13 org.python.python 0x0000000102662c58 function_code_fastcall + 104 14 org.python.python 0x000000010273ad3c call_function + 732 15 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 16 org.python.python 0x0000000102662c58 function_code_fastcall + 104 17 org.python.python 0x0000000102664ce2 method_vectorcall + 274 18 org.python.python 0x00000001027e0016 t_bootstrap + 70 19 org.python.python 0x0000000102791229 pythread_wrapper + 25 20 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 21 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 22 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 11: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 org.python.python 0x00000001027915d6 PyThread_acquire_lock_timed + 454 3 _queue.cpython-39-darwin.so 0x000000011dbfb57e _queue_SimpleQueue_get_impl + 526 4 _queue.cpython-39-darwin.so 0x000000011dbfb126 _queue_SimpleQueue_get + 198 5 org.python.python 0x00000001026a0fed cfunction_vectorcall_FASTCALL_KEYWORDS + 125 6 org.python.python 0x000000010273ad3c call_function + 732 7 org.python.python 0x0000000102738318 _PyEval_EvalFrameDefault + 25880 8 org.python.python 0x0000000102662c58 function_code_fastcall + 104 9 org.python.python 0x00000001027388b9 _PyEval_EvalFrameDefault + 27321 10 org.python.python 0x0000000102662c58 function_code_fastcall + 104 11 org.python.python 0x000000010273ad3c call_function + 732 12 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 13 org.python.python 0x0000000102662c58 function_code_fastcall + 104 14 org.python.python 0x000000010273ad3c call_function + 732 15 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 16 org.python.python 0x0000000102662c58 function_code_fastcall + 104 17 org.python.python 0x0000000102664ce2 method_vectorcall + 274 18 org.python.python 0x00000001027e0016 t_bootstrap + 70 19 org.python.python 0x0000000102791229 pythread_wrapper + 25 20 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 21 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 22 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 12: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 org.python.python 0x00000001027915d6 PyThread_acquire_lock_timed + 454 3 _queue.cpython-39-darwin.so 0x000000011dbfb57e _queue_SimpleQueue_get_impl + 526 4 _queue.cpython-39-darwin.so 0x000000011dbfb126 _queue_SimpleQueue_get + 198 5 org.python.python 0x00000001026a0fed cfunction_vectorcall_FASTCALL_KEYWORDS + 125 6 org.python.python 0x000000010273ad3c call_function + 732 7 org.python.python 0x0000000102738318 _PyEval_EvalFrameDefault + 25880 8 org.python.python 0x0000000102662c58 function_code_fastcall + 104 9 org.python.python 0x00000001027388b9 _PyEval_EvalFrameDefault + 27321 10 org.python.python 0x0000000102662c58 function_code_fastcall + 104 11 org.python.python 0x000000010273ad3c call_function + 732 12 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 13 org.python.python 0x0000000102662c58 function_code_fastcall + 104 14 org.python.python 0x000000010273ad3c call_function + 732 15 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 16 org.python.python 0x0000000102662c58 function_code_fastcall + 104 17 org.python.python 0x0000000102664ce2 method_vectorcall + 274 18 org.python.python 0x00000001027e0016 t_bootstrap + 70 19 org.python.python 0x0000000102791229 pythread_wrapper + 25 20 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 21 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 22 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 13: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 org.python.python 0x00000001027915d6 PyThread_acquire_lock_timed + 454 3 _queue.cpython-39-darwin.so 0x000000011dbfb57e _queue_SimpleQueue_get_impl + 526 4 _queue.cpython-39-darwin.so 0x000000011dbfb126 _queue_SimpleQueue_get + 198 5 org.python.python 0x00000001026a0fed cfunction_vectorcall_FASTCALL_KEYWORDS + 125 6 org.python.python 0x000000010273ad3c call_function + 732 7 org.python.python 0x0000000102738318 _PyEval_EvalFrameDefault + 25880 8 org.python.python 0x0000000102662c58 function_code_fastcall + 104 9 org.python.python 0x00000001027388b9 _PyEval_EvalFrameDefault + 27321 10 org.python.python 0x0000000102662c58 function_code_fastcall + 104 11 org.python.python 0x000000010273ad3c call_function + 732 12 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 13 org.python.python 0x0000000102662c58 function_code_fastcall + 104 14 org.python.python 0x000000010273ad3c call_function + 732 15 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 16 org.python.python 0x0000000102662c58 function_code_fastcall + 104 17 org.python.python 0x0000000102664ce2 method_vectorcall + 274 18 org.python.python 0x00000001027e0016 t_bootstrap + 70 19 org.python.python 0x0000000102791229 pythread_wrapper + 25 20 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 21 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 22 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 14: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 15: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 16: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 17: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 18: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 19: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 20: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 21: 0 libsystem_pthread.dylib 0x00007fff710cb3f0 start_wqthread + 0
Thread 22: 0 libsystem_pthread.dylib 0x00007fff710cb3f0 start_wqthread + 0
Thread 3 crashed with X86 Thread State (64-bit): rax: 0x000000030704f400 rbx: 0x0000000000000005 rcx: 0x000000030704f200 rdx: 0x0000000000000000 rdi: 0x0000000000000000 rsi: 0x000000030704f100 rbp: 0x0000700008783d90 rsp: 0x0000700008783d68 r8: 0x000000010d1e7000 r9: 0x000000650e632440 r10: 0x000000030704f000 r11: 0x000000030704f500 r12: 0x000000030704f600 r13: 0x000000030704f300 r14: 0x0000000000000000 r15: 0x000000030704f700 rip: 0x0000000105d72a0b rfl: 0x0000000000010246 cr2: 0x000000010d1e7000
Logical CPU: 3 Error Code: 0x00000007 Trap Number: 14
Binary Images:
0x102615000 - 0x102615fff +PythonApp (0) <3B22D1C8-4C14-325F-AF90-727271966B20> /Applications/Orange3.app/Contents/MacOS/PythonApp
0x102623000 - 0x10288bfff +org.python.python (3.9.12, [c] 2001-2021 Python Software Foundation. - 3.9.12) <3363E769-D60A-3A62-8CE1-812F915FED9B> /Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.9/Python
0x1029f2000 - 0x1029f4fff +_heapq.cpython-39-darwin.so (0) <26E2211D-6E3C-34A0-9EF2-E395EC9E55EC> /Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x1029fe000 - 0x102a06fff +math.cpython-39-darwin.so (0) <87ED7F18-FDC5-3CC8-97F0-EE393EE6AB9F> /Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x102a14000 - 0x102a23fff +_datetime.cpython-39-darwin.so (0)
as a followup to the below, the same happened with manifold learning: I suspect python is running out of memory.
Hi Marko,
thanks very much for fixing this in 3.34, greatly appreciated.
Here is a crash I experienced doing Louvain clustering. Looking at the crash log I suspect the problem is deep inside python and not something you can fix, but i thought iād pass it on anyway.
All the best Peter.
On Nov 17, 2022, at 4:41 AM, Marko Toplak @. @.>> wrote:
I can confirm the issue also on Linux.
Did you process your files differently? The working model seems to be build on the raw data, while for the non-working one it seems that you used PCA somewhere. Can you confirm? Thanks!
ā Reply to this email directly, view it on GitHub https://github.com/biolab/orange3/issues/6206#issuecomment-1318511363, or unsubscribe https://github.com/notifications/unsubscribe-auth/A4HJKKZN7WFCXYSM2FS6RRTWIYKXPANCNFSM6AAAAAASCVCPYM. You are receiving this because you authored the thread.
Process: Python [69228] Path: /Applications/Orange3.app/Contents/MacOS/PythonApp Identifier: si.biolab.orange Version: 3.34.0 (3.34.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: Python [69228] User ID: 501
Date/Time: 2022-12-16 11:10:14.762 -0700 OS Version: Mac OS X 10.14.6 (18G103) Report Version: 12 Anonymous UUID: F1EE18DB-1661-98B8-E3A6-D93C0B42532A
Time Awake Since Boot: 1500000 seconds
System Integrity Protection: enabled
Crashed Thread: 3
Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_PROTECTION_FAILURE at 0x000000010d1e7000 Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Bus error: 10 Termination Reason: Namespace SIGNAL, Code 0xa Terminating Process: exc handler [69228]
VM Regions Near 0x10d1e7000:
VM_ALLOCATE 00000001071e7000-000000010d1e7000 [ 96.0M] rw-/rwx SM=PRV
--> TEXT 000000010d1e7000-000000010d1fb000 [ 80K] r-x/rwx SM=COW /Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
DATA 000000010d1fb000-000000010d1ff000 [ 16K] rw-/rwx SM=COW /Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
Thread 0:: Dispatch queue: com.apple.main-thread 0 libopenblas64_.0.dylib 0x0000000105d6e68d .L13_19 + 365 1 ??? 0x0000000000000003 0 + 3
Thread 1: 0 libopenblas64_.0.dylib 0x0000000105d6e5b2 .L13_19 + 146
Thread 2: 0 libopenblas64_.0.dylib 0x0000000105d6c70d .L12_19 + 365
Thread 3 Crashed: 0 libopenblas64_.0.dylib 0x0000000105d72a0b dgemm_oncopyHASWELL + 267 1 libopenblas64.0.dylib 0x0000000103182f42 innerthread + 1474 2 libopenblas64.0.dylib 0x000000010336d41c blas_thread_server + 684 3 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 4: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libopenblas.0.dylib 0x00000001103d070f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 5: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libopenblas.0.dylib 0x00000001103d070f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 6: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libopenblas.0.dylib 0x00000001103d070f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 4 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 5 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 7:: com.apple.CFSocket.private 0 libsystem_kernel.dylib 0x00007fff7101461a select + 10 1 com.apple.CoreFoundation 0x00007fff44fb12d2 CFSocketManager + 635 2 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 3 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 4 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 8:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff7100d22a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff7100d76c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff44f8394e CFRunLoopServiceMachPort + 328 3 com.apple.CoreFoundation 0x00007fff44f82ebc CFRunLoopRun + 1612 4 com.apple.CoreFoundation 0x00007fff44f8261e CFRunLoopRunSpecific + 455 5 com.apple.AppKit 0x00007fff425814a2 _NSEventThread + 175 6 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 7 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 8 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 9: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 org.python.python 0x00000001027915d6 PyThread_acquire_lock_timed + 454 3 _queue.cpython-39-darwin.so 0x000000011dbfb57e _queue_SimpleQueue_get_impl + 526 4 _queue.cpython-39-darwin.so 0x000000011dbfb126 _queue_SimpleQueue_get + 198 5 org.python.python 0x00000001026a0fed cfunction_vectorcall_FASTCALL_KEYWORDS + 125 6 org.python.python 0x000000010273ad3c call_function + 732 7 org.python.python 0x0000000102738318 _PyEval_EvalFrameDefault + 25880 8 org.python.python 0x0000000102662c58 function_code_fastcall + 104 9 org.python.python 0x00000001027388b9 _PyEval_EvalFrameDefault + 27321 10 org.python.python 0x0000000102662c58 function_code_fastcall + 104 11 org.python.python 0x000000010273ad3c call_function + 732 12 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 13 org.python.python 0x0000000102662c58 function_code_fastcall + 104 14 org.python.python 0x000000010273ad3c call_function + 732 15 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 16 org.python.python 0x0000000102662c58 function_code_fastcall + 104 17 org.python.python 0x0000000102664ce2 method_vectorcall + 274 18 org.python.python 0x00000001027e0016 t_bootstrap + 70 19 org.python.python 0x0000000102791229 pythread_wrapper + 25 20 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 21 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 22 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 10: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 org.python.python 0x00000001027915d6 PyThread_acquire_lock_timed + 454 3 _queue.cpython-39-darwin.so 0x000000011dbfb57e _queue_SimpleQueue_get_impl + 526 4 _queue.cpython-39-darwin.so 0x000000011dbfb126 _queue_SimpleQueue_get + 198 5 org.python.python 0x00000001026a0fed cfunction_vectorcall_FASTCALL_KEYWORDS + 125 6 org.python.python 0x000000010273ad3c call_function + 732 7 org.python.python 0x0000000102738318 _PyEval_EvalFrameDefault + 25880 8 org.python.python 0x0000000102662c58 function_code_fastcall + 104 9 org.python.python 0x00000001027388b9 _PyEval_EvalFrameDefault + 27321 10 org.python.python 0x0000000102662c58 function_code_fastcall + 104 11 org.python.python 0x000000010273ad3c call_function + 732 12 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 13 org.python.python 0x0000000102662c58 function_code_fastcall + 104 14 org.python.python 0x000000010273ad3c call_function + 732 15 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 16 org.python.python 0x0000000102662c58 function_code_fastcall + 104 17 org.python.python 0x0000000102664ce2 method_vectorcall + 274 18 org.python.python 0x00000001027e0016 t_bootstrap + 70 19 org.python.python 0x0000000102791229 pythread_wrapper + 25 20 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 21 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 22 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 11: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 org.python.python 0x00000001027915d6 PyThread_acquire_lock_timed + 454 3 _queue.cpython-39-darwin.so 0x000000011dbfb57e _queue_SimpleQueue_get_impl + 526 4 _queue.cpython-39-darwin.so 0x000000011dbfb126 _queue_SimpleQueue_get + 198 5 org.python.python 0x00000001026a0fed cfunction_vectorcall_FASTCALL_KEYWORDS + 125 6 org.python.python 0x000000010273ad3c call_function + 732 7 org.python.python 0x0000000102738318 _PyEval_EvalFrameDefault + 25880 8 org.python.python 0x0000000102662c58 function_code_fastcall + 104 9 org.python.python 0x00000001027388b9 _PyEval_EvalFrameDefault + 27321 10 org.python.python 0x0000000102662c58 function_code_fastcall + 104 11 org.python.python 0x000000010273ad3c call_function + 732 12 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 13 org.python.python 0x0000000102662c58 function_code_fastcall + 104 14 org.python.python 0x000000010273ad3c call_function + 732 15 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 16 org.python.python 0x0000000102662c58 function_code_fastcall + 104 17 org.python.python 0x0000000102664ce2 method_vectorcall + 274 18 org.python.python 0x00000001027e0016 t_bootstrap + 70 19 org.python.python 0x0000000102791229 pythread_wrapper + 25 20 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 21 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 22 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 12: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 org.python.python 0x00000001027915d6 PyThread_acquire_lock_timed + 454 3 _queue.cpython-39-darwin.so 0x000000011dbfb57e _queue_SimpleQueue_get_impl + 526 4 _queue.cpython-39-darwin.so 0x000000011dbfb126 _queue_SimpleQueue_get + 198 5 org.python.python 0x00000001026a0fed cfunction_vectorcall_FASTCALL_KEYWORDS + 125 6 org.python.python 0x000000010273ad3c call_function + 732 7 org.python.python 0x0000000102738318 _PyEval_EvalFrameDefault + 25880 8 org.python.python 0x0000000102662c58 function_code_fastcall + 104 9 org.python.python 0x00000001027388b9 _PyEval_EvalFrameDefault + 27321 10 org.python.python 0x0000000102662c58 function_code_fastcall + 104 11 org.python.python 0x000000010273ad3c call_function + 732 12 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 13 org.python.python 0x0000000102662c58 function_code_fastcall + 104 14 org.python.python 0x000000010273ad3c call_function + 732 15 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 16 org.python.python 0x0000000102662c58 function_code_fastcall + 104 17 org.python.python 0x0000000102664ce2 method_vectorcall + 274 18 org.python.python 0x00000001027e0016 t_bootstrap + 70 19 org.python.python 0x0000000102791229 pythread_wrapper + 25 20 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 21 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 22 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 13: 0 libsystem_kernel.dylib 0x00007fff7101086a __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 org.python.python 0x00000001027915d6 PyThread_acquire_lock_timed + 454 3 _queue.cpython-39-darwin.so 0x000000011dbfb57e _queue_SimpleQueue_get_impl + 526 4 _queue.cpython-39-darwin.so 0x000000011dbfb126 _queue_SimpleQueue_get + 198 5 org.python.python 0x00000001026a0fed cfunction_vectorcall_FASTCALL_KEYWORDS + 125 6 org.python.python 0x000000010273ad3c call_function + 732 7 org.python.python 0x0000000102738318 _PyEval_EvalFrameDefault + 25880 8 org.python.python 0x0000000102662c58 function_code_fastcall + 104 9 org.python.python 0x00000001027388b9 _PyEval_EvalFrameDefault + 27321 10 org.python.python 0x0000000102662c58 function_code_fastcall + 104 11 org.python.python 0x000000010273ad3c call_function + 732 12 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 13 org.python.python 0x0000000102662c58 function_code_fastcall + 104 14 org.python.python 0x000000010273ad3c call_function + 732 15 org.python.python 0x00000001027381ae _PyEval_EvalFrameDefault + 25518 16 org.python.python 0x0000000102662c58 function_code_fastcall + 104 17 org.python.python 0x0000000102664ce2 method_vectorcall + 274 18 org.python.python 0x00000001027e0016 t_bootstrap + 70 19 org.python.python 0x0000000102791229 pythread_wrapper + 25 20 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 21 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 22 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 14: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 15: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 16: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 17: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 18: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 19: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 20: 0 libsystem_kernel.dylib 0x00007fff7101086a psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff710cf56e _pthread_cond_wait + 722 2 libomp.dylib 0x000000011db7e16b __kmp_suspend_64 + 299 3 libomp.dylib 0x000000011db66930 kmp_flag_64::wait(kmp_info, int, void) + 1552 4 libomp.dylib 0x000000011db627d6 kmp_hyper_barrier_release(barrier_type, kmp_info, int, int, int, void) + 166 5 libomp.dylib 0x000000011db65f5d kmp_fork_barrier(int, int) + 445 6 libomp.dylib 0x000000011db4575a kmp_launch_thread + 314 7 libomp.dylib 0x000000011db7cc1a __kmp_launch_worker(void*) + 330 8 libsystem_pthread.dylib 0x00007fff710cc2eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff710cf249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff710cb40d thread_start + 13
Thread 21: 0 libsystem_pthread.dylib 0x00007fff710cb3f0 start_wqthread + 0
Thread 22: 0 libsystem_pthread.dylib 0x00007fff710cb3f0 start_wqthread + 0
Thread 3 crashed with X86 Thread State (64-bit): rax: 0x000000030704f400 rbx: 0x0000000000000005 rcx: 0x000000030704f200 rdx: 0x0000000000000000 rdi: 0x0000000000000000 rsi: 0x000000030704f100 rbp: 0x0000700008783d90 rsp: 0x0000700008783d68 r8: 0x000000010d1e7000 r9: 0x000000650e632440 r10: 0x000000030704f000 r11: 0x000000030704f500 r12: 0x000000030704f600 r13: 0x000000030704f300 r14: 0x0000000000000000 r15: 0x000000030704f700 rip: 0x0000000105d72a0b rfl: 0x0000000000010246 cr2: 0x000000010d1e7000
Logical CPU: 3 Error Code: 0x00000007 Trap Number: 14
Binary Images:
0x102615000 - 0x102615fff +PythonApp (0) <3B22D1C8-4C14-325F-AF90-727271966B20> /Applications/Orange3.app/Contents/MacOS/PythonApp
0x102623000 - 0x10288bfff +org.python.python (3.9.12, [c] 2001-2021 Python Software Foundation. - 3.9.12) <3363E769-D60A-3A62-8CE1-812F915FED9B> /Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.9/Python
0x1029f2000 - 0x1029f4fff +_heapq.cpython-39-darwin.so (0) <26E2211D-6E3C-34A0-9EF2-E395EC9E55EC> /Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x1029fe000 - 0x102a06fff +math.cpython-39-darwin.so (0) <87ED7F18-FDC5-3CC8-97F0-EE393EE6AB9F> /Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x102a14000 - 0x102a23fff +_datetime.cpython-39-darwin.so (0)
The original issue is still a problem in master.
I can reproduce the error easily with the following script but haven't figured out yet what is happening:
import Orange
import pickle
data = Orange.data.Table("iris")
pca = Orange.projection.PCA()(data)(data)
s = pickle.dumps(pca)
pickle.loads(s) # OK
model = Orange.modelling.NNLearner()(pca)
print(model)
s = pickle.dumps(model)
model_unpicked = pickle.loads(s) # crashes
print(model_unpicked(data))
About Louvain and Manifold learning issue posted later: please open a separate issue, where you include workflows and your data set.
At first I see that in the first loads
ComputeValueProjector
is loaded with the following __dict__
:
{'compute_shared': <Orange.projection.base.TransformDomain object at 0x7fce5e316ad0>, 'variable': None, 'projection': PCA, 'feature': 3, 'transformed': None}
But in the second case it is empty, thus we get:
File "/home/marko/dev/orange3/test.py", line 19, in <module>
model_unpicked = pickle.loads(s)
File "/home/marko/dev/orange3/Orange/data/variable.py", line 425, in __hash__
return hash((self.name, var.name, type(self), var._compute_value))
File "/home/marko/dev/orange3/Orange/data/util.py", line 102, in __hash__
return hash((type(self), self.compute_shared, self.variable))
AttributeError: 'ComputeValueProjector' object has no attribute 'compute_shared'
The same happens with RandomForestLearner, but NOT with TreeLearner.
Thanks for the update Marko,
Best Peter.
On Jan 20, 2023, at 7:00 AM, Marko Toplak @.***> wrote:
The original issue is still a problem in master.
I can reproduce the error easily with the following script but haven't figured out yet what is happening:
import Orange import pickle
data = Orange.data.Table("iris") pca = Orange.projection.PCA()(data)(data)
s = pickle.dumps(pca) pickle.loads(s) # OK
model = Orange.modelling.NNLearner()(pca) print(model)
s = pickle.dumps(model) model_unpicked = pickle.loads(s) # crashes print(model_unpicked(data)) About Louvain and Manifold learning issue posted later: please open a separate issue, where you include workflows and your data set.
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This issue should be fixed in #6317. Any new pickled models should work in the next released version, but the ones already created will still fail.
thx Marko, great work on Orange! p
On Jan 27, 2023, at 7:42 AM, Marko Toplak @.***> wrote:
This issue should be fixed in #6317 https://github.com/biolab/orange3/pull/6317. Any new pickled models should work in the next released version, but the ones already created will still fail.
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1) double-click the Load Model widget to select a pkcls file to load, sometimes (not always), an exception is raised immediately
2) if it isn't and you get to select the pkcls file, the attached model (saved from a previous neural network training session, see the DB link) consistently raises an exception and fails to load. Also, this model fails to load directly from python, so maybe there are 2 problems, with the Save Model and Load Model?
Orange v3.33 macOS 10.14.6 (happens on different Macs, all running Mojave) How you installed Orange: from your dmg (but also happens when I installed via Anaconda)
The models are too large to upload to github so you can find them and the ows file here:
https://www.dropbox.com/s/2cwcthf7uuqs3ui/orangeBug.zip?dl=0
The smaller model loads OK, the larger one generated by a more complex NN fails every time.