Pubmed articles scraper

biolab / text-semantics

The package with scripts for semantic analyser project

MIT License

4 stars 5 forks source link

Pubmed articles scraper #61

Closed PrimozGodec closed 3 years ago

PrimozGodec commented 3 years ago

The scraper script for articles from PubMed. The script scrapes articles' metadata and abstracts and packs them in the format for the text-semantics repository.

Scraped data for the topic longevity are already published at the repository. Each article currently contains the following information:

title
abstract
journal
authors
mesh_terms (PubMed "keywords")
keywords - keywords by author
pubmed_id
year

It would be nice if the reviewer also checks data at the repository.

ajdapretnar commented 3 years ago

Would the PubMed widget not be useful?

ajdapretnar commented 3 years ago

Or is this because of the special structure required?

PrimozGodec commented 3 years ago

I totally forgot about the Pubmed widget. 🙈 Anyway, this implements retrieve some additional features such as keywords which may be important for the planned article.