search

biolink / biolink-model-toolkit

A collection of useful python functions for looking up information and working with the Biolink Model
https://biolink.github.io/biolink-model-toolkit/
BSD 3-Clause "New" or "Revised" License
20 stars 11 forks source link

HTTP Error 404 #110

Closed andrewsu closed 1 year ago

andrewsu commented 1 year ago

This is my "hello world" attempt at using BMT, and I'm getting this error HTTPError: HTTP Error 404: https://raw.githubusercontent.com/usr/local/lib/python3.8/dist-packages/linkml_runtime/linkml_model/model/schema/types.yaml

https://colab.research.google.com/drive/1m4ZHAV8Nbi_vCXQaMvEjftUbq0wxlEzt?usp=sharing

I get something similar when I try it locally instead of colab. It looks like it's trying to mix a remote URL with a local path?

image

sierra-moxon commented 1 year ago

Thanks @andrewsu - https://github.com/linkml/linkml-runtime/pull/253 - a stop gap measure is to pin an earlier version of linkml-runtime in your local environment, but we're fixing ASAP.

sierra-moxon commented 1 year ago

Note: new release: https://github.com/linkml/linkml-runtime/releases/tag/v1.4.8
I believe recreating your virtual environment will pull in the new release and get you going again.

andrewsu commented 1 year ago

confirmed, thanks for the quick fix!