search

biolink / biolink-model-toolkit

A collection of useful python functions for looking up information and working with the Biolink Model
https://biolink.github.io/biolink-model-toolkit/
BSD 3-Clause "New" or "Revised" License
20 stars 11 forks source link

siRNA and microRNA elements missing? #46

Closed CaseyTa closed 2 years ago

CaseyTa commented 3 years ago

I was looking for descendants of biolink:MolecularEntity when I noticed biolink:siRNA and biolink:microRNA couldn't be found in bmt. bmt version 0.7.2 is installed (latest on PyPI). Here's a code snippet to show the issue:

from bmt import Toolkit
from pprint import pprint
t = Toolkit()

for d in t.get_descendants('biolink:Entity', reflexive=True):
    if t.get_element(d) is None:
        print(d)