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biolink / biolink-model-toolkit

A collection of useful python functions for looking up information and working with the Biolink Model
https://biolink.github.io/biolink-model-toolkit/
BSD 3-Clause "New" or "Revised" License
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bmt version 0.9.0 causing compatibility issues with reasoner-validator #97

Closed CaseyTa closed 1 year ago

CaseyTa commented 1 year ago

Seems that bmt version 0.9.0 is having compatibility issues with reasoner-validator?

Our continuous monitoring tests for COHD are failing this weekend after the release of bmt 0.9.0. It seems like our github workflow ends up installing reasoner-validator 2.0.0. Output messages when trying to install bmt and reasoner-validator include:

INFO: pip is looking at multiple versions of bmt to determine which version is compatible with other requirements. This could take a while.
...
INFO: pip is looking at multiple versions of reasoner-validator to determine which version is compatible with other requirements. This could take a while.

Instructing the workflow to install bmt version 0.8.12 specifically fixes the issue (reasoner-validator 3.1.4 gets installed)

sierra-moxon commented 1 year ago

I think you've moved past this version of BMT, @CaseyTa, is that right?

CaseyTa commented 1 year ago

@sierra-moxon yes, thanks!