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biolink / biolink-model

Schema and generated objects for biolink data model and upper ontology
https://biolink.github.io/biolink-model/
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two suggested changes to infores_catalog.yaml #1339

Open saramsey opened 1 year ago

saramsey commented 1 year ago

I would like to ask if the xref URLs can get updated for the entries for infores:rtx-kg2 and infores:arax in infores_catalog.yaml. Per discussion in the Translator Data Modeling Committee on 6/22, I understand that the xref properties for entries in the infores catalog should point to Translator Wiki pages.

So in that case, for infores:arax, the relevant Wiki page is: https://github.com/NCATSTranslator/Translator-All/wiki/Expander-Agent

and for infores:rtx-kg2, the relevant Wiki page is: https://github.com/NCATSTranslator/Translator-All/wiki/KG2

Tagging @sierra-moxon

saramsey commented 1 year ago

For the description field for the infores:rtx-kg2 entry, I propose changing it to:

RTX-KG2 is a Translator Knowledge Provider of triples from RTX-KG2c, a comprehensive biomedical knowledge graph built by integrating knowledge from 70 different sources with Biolink as the semantic layer.

saramsey commented 1 year ago

For the description field for the infores:arax entry, I propose changing it to:

ARAX is a Translator Autonomous Relay Agent that can find knowledge subgraphs matching multi-hop query types, with additional supportive information (e.g., concept co-occurrence in the biomedical literature or in electronic health records) optionally overlaid and used for prioritizing results. ARAX combines three different quantitative measures of result subgraphs' overall edge weights, in order to rank results. ARAX can also provide predicted "treats" relationships between chemical substances and diseases, and predicted directional "regulates" relationships between chemical substances and genes, through the "xDTD" and "xCRG" reinforcement learning-based models.