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biolink / biolink-model

Schema and generated objects for biolink data model and upper ontology
https://biolink.github.io/biolink-model/
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UMLS Semantic Type URI Doesn't Resolve #776

Closed ecwood closed 2 years ago

ecwood commented 3 years ago

The base URI for the UMLS semantic types doesn't resolve: https://github.com/biolink/biolink-model/blob/763c53f5e656bb5c47d99fe893a2bc60bae70b8c/biolink-model.yaml#L117

Example: https://metamap.nlm.nih.gov/Docs/SemanticTypes_2018AB.txt/code#T121 gives there error

image

Expander Agent has had more success with this base URI: http://purl.bioontology.org/ontology/STY/. An example is: http://purl.bioontology.org/ontology/STY/T121.

cmungall commented 3 years ago

See also: #749. - yes I also suggested bioportal there

hiwever i think the correct thing to do is first to register on bioregistry.io it may eventually propagate to id.org

sierra-moxon commented 3 years ago

original bug is fixed by Chris' PR. Still need to register UMLSSC with bioregistry.

sierra-moxon commented 2 years ago

This was handled in #749