Missing information from Monarch lite

[cmungall]

In the alpha medikanren instance, that pulls in monarch lite, they are lacking phenotypes for many types of diabetes, including for example MODY11

But we definitely have these: https://monarchinitiative.org/disease/MONDO:0013242#phenotypes

So either

• bug in making monarch lite @kshefchek
• bug in kgx that filters this @lhannest
• bug in minikaner @gregr @webyrd

[deepakunni3]

Running the Cypher,

MATCH (s:disease {id: "MONDO:0013242"})-[p]-(o) RETURN s,p,o

at http://scigraph.ncats.io yields:

Looks like the disease to phenotype associations are incomplete in Monarch Lite.

[kshefchek]

Correct, looks like it's only gene-disease, gene-phenotype, gene-gene - to allow us to test graph merging: https://github.com/monarch-initiative/monarch-cypher-queries/tree/master/src/main/cypher/kg-transform