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biologger / speciesprimer

The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
GNU General Public License v3.0
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Serovar level #18

Open miRNA67 opened 2 years ago

miRNA67 commented 2 years ago

Dear,

I am interested in design primers for some serovars of Salmonella enterica with your pipeline. Is possible to use it in this case?

Thank you

biologger commented 2 years ago

Hi,

Unfortunately not, the supported taxonomic levels are species/subspecies.

I had tried to implement a pathovar keyword in v2.2-beta.4 and could probably add a serovar (sv.) keyword, however as you can see in the pathovar level, issue 5 primer design will still not be straight forward.