Open biomadeira opened 7 years ago
Have you considered a more modular structure?
A fetcher
sub-package with modules/objects for each file type? This would allow different servers to be set as well, i.e. the RCSB PDB offers PDB file assemblies amongst other options. This would also make such expansion a lot easier?!
@fsimkovic That would be much better going forward!
I guess we could have generic fetcher
class and then as many sub-classes as services/data sources we want, with proper abstraction and expandability.
I will start a new Project to help delineate what needs to be refactored... Feel free to jump in on this! Your ideas and changes are much appreciated!
Just of the top of my head...
PDB
UniProt
DSSP
Ensembl
CATH