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biomap-research / scFoundation

Apache License 2.0
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API submission sample size issue #25

Closed Git-zhaohui closed 3 weeks ago

Git-zhaohui commented 1 month ago

Hello Author,

I have encountered an issue while using your scfoundation API. Specifically, when I submit a gene expression profile with several hundred samples, it results in an error. However, it runs successfully when I limit the submission to only 100 samples. According to the API documentation, it should handle up to 1000 samples without any problem. Could you help me understand what might be going wrong?

Thank you.

The following is a record of the error

1715743685530

WhirlFirst commented 3 weeks ago

Since I have replied to you via email, now I paste my answer here.

Thank you for reaching out regarding the scFoundation API. The number specified in the documentation serves as a guideline, but the actual feasible sample count can vary depending on factors such as your network connection to our server and the sparsity of the expression profiles. I recommend making multiple API calls with a limited number of cells each time to ensure successful execution.