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biomass-dev
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biomass
A Python Framework for Modeling and Analysis of Signaling Systems
http://biomass-core.rtfd.io
Apache License 2.0
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13
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Fix user_defined and allow multiple reactants/products
#277
k-arakane
closed
2 months ago
0
[pre-commit.ci] pre-commit autoupdate
#276
pre-commit-ci[bot]
opened
2 months ago
0
Add JAK-STAT model to example models
#275
himoto
closed
2 months ago
1
Allow different time points between conditions for experimental data
#273
k-arakane
closed
2 months ago
7
[pre-commit.ci] pre-commit autoupdate
#272
pre-commit-ci[bot]
closed
2 months ago
0
Update index.rst
#271
himoto
closed
4 months ago
0
Update citing.rst
#270
himoto
closed
4 months ago
0
Add Issue and Volume info
#269
himoto
closed
4 months ago
0
Delete badge and add reference
#268
himoto
closed
5 months ago
0
Update citation infomation
#267
himoto
closed
5 months ago
0
Update MANIFEST.in
#266
himoto
closed
5 months ago
0
Support Python 3.12
#265
himoto
closed
5 months ago
0
Specify minimal `sphinx-rtd-theme` version
#264
himoto
closed
11 months ago
0
Fix pepy badge
#263
himoto
closed
1 year ago
0
Remove Sphinx version constraints
#262
himoto
closed
11 months ago
0
Sphinx version
#261
himoto
closed
11 months ago
0
[pre-commit.ci] pre-commit autoupdate
#260
pre-commit-ci[bot]
closed
5 months ago
0
Don't use Sphinx version 7 or more
#259
himoto
closed
1 year ago
0
Sphinx v7 is incompatible due to usage of style key
#258
himoto
closed
1 year ago
0
Remove unused variable: ` __version__`
#257
himoto
closed
1 year ago
0
Use default ddof(=0)
#256
himoto
closed
1 year ago
0
Update .readthedocs.yaml to resolve build error
#255
himoto
closed
1 year ago
0
Read the Docs build failed
#254
himoto
closed
1 year ago
1
Release v0.12.0
#253
himoto
closed
1 year ago
0
Add support for Python 3.11 and numpy 1.24
#252
himoto
closed
1 year ago
0
Remove Sphinx version constraint
#251
himoto
closed
1 year ago
0
Use Sphinx 6 after `sphinx_rtd_theme` supports it
#250
himoto
closed
1 year ago
0
Update email address
#249
himoto
closed
1 year ago
0
Email address needs to be updated
#248
himoto
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#246
pre-commit-ci[bot]
closed
1 year ago
0
Text-to-model conversion is not compatible with `black>=23.1`
#245
himoto
closed
1 year ago
0
Release v0.11.1
#244
himoto
closed
1 year ago
1
Move package setup to toml file
#243
himoto
closed
1 year ago
0
Move package setup to `pyproject.toml `
#242
himoto
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#241
pre-commit-ci[bot]
closed
1 year ago
0
Update arguments of `run_analysis` function
#240
himoto
closed
1 year ago
0
Visualization of sensitivity analysis via heatmap
#239
himoto
closed
1 year ago
0
Add file name
#238
himoto
closed
1 year ago
0
Release v0.11.0
#237
himoto
closed
1 year ago
0
Pre-commit error
#236
himoto
closed
1 year ago
0
The upper left logo does not appear in online documentation
#235
himoto
closed
1 year ago
0
Use `copy_to_current` function in example code
#233
himoto
closed
1 year ago
0
Update `state_transition` rule in Text2Model
#232
himoto
closed
1 year ago
0
Raise `DetectionError` instead of creating wrong model
#231
himoto
closed
1 year ago
0
Update solver.py
#230
himoto
closed
1 year ago
0
Suppress numba warning
#229
himoto
closed
1 year ago
0
Allowable type of method in `solve_ode`
#228
himoto
closed
1 year ago
0
Improve instructions for executing example models
#227
himoto
closed
1 year ago
0
Example models
#226
himoto
closed
1 year ago
1
Fix a typo in `state_transition` rule
#225
himoto
closed
1 year ago
0
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