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biomedicalinformaticsgroup / Sargasso

Sargasso disambiguates mixed-species high-throughput sequencing data.
http://biomedicalinformaticsgroup.github.io/Sargasso/
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bowtie2 parameter bug for dnaseq #102

Closed hxin closed 5 years ago

hxin commented 5 years ago

https://github.com/statbio/Sargasso/blob/master/bin/map_reads_dnaseq#L28

The -r parameter should be -U.

hxin commented 5 years ago

This can be merged to master now. @lweasel