Critical steps 30-34 for avoiding misinterpretation

biomedicalinformaticsgroup / Sargasso

Sargasso disambiguates mixed-species high-throughput sequencing data.

http://biomedicalinformaticsgroup.github.io/Sargasso/

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Critical steps 30-34 for avoiding misinterpretation #106

Open mavino opened 3 years ago

mavino commented 3 years ago

Is there any possibility you shared your scripts how to handle steps 30-34 of https://www.nature.com/articles/s41596-018-0029-2.pdf, please?

lweasel commented 3 years ago

Hi,

Many apologies for my long delay in replying. Unfortunately, the code that we have to perform these calculations does not (currrently) exist in a form which is easy to share. However, I agree that it could be very useful to provide this functionality as a support script in the Sargasso repository: we will start to have a look at how we can provide this as a standalone script.