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biomedicalinformaticsgroup / Sargasso

Sargasso disambiguates mixed-species high-throughput sequencing data.
http://biomedicalinformaticsgroup.github.io/Sargasso/
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Add step to Makefile to remove "masked" reads #16

Closed lweasel closed 6 years ago

lweasel commented 9 years ago

i.e. we map raw reads to the STAR indices of the masking sequences (e.g. ribosomal RNA), and filter out any reads which map to either set of sequences. The result of this step should be a new set of raw read FASTQ files from which the masked reads have been removed.

lweasel commented 6 years ago

Don't think this is worth it - will not fix.