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biomedicalinformaticsgroup / Sargasso

Sargasso disambiguates mixed-species high-throughput sequencing data.
http://biomedicalinformaticsgroup.github.io/Sargasso/
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Add real data tests #30

Closed lweasel closed 7 years ago

lweasel commented 8 years ago

I'd like to add some tests which will run the pipeline on some real data sets to check for changes in the sets of reads assigned to different species (i.e. to check the effect of any changes that we make to the actual filtering algorithm). Hopefully, via Travis CI, we could have these run automatically upon pushing to GitHub, while they could also be optionally run locally.

lweasel commented 8 years ago

Initial tests added and can be run locally (or as a pre-commit git hook - see 1eee0e915436bddde9ec63a4756ec9ff11c8a414). Unfortunately Travis CI only works with public repositories, so we'll have to wait until we make this public before adding continuous integration testing.

lweasel commented 7 years ago

Also it would be good to include instructions on how the user can run these tests after installation to check that everything is working.