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biomedicalinformaticsgroup / Sargasso

Sargasso disambiguates mixed-species high-throughput sequencing data.
http://biomedicalinformaticsgroup.github.io/Sargasso/
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add options --delete-intermediate to delete intermediate BAMs including the raw mapped BAMs and the sorted BAMs. #52

Closed hxin closed 6 years ago

hxin commented 6 years ago

tested with the pipeline_test(rat/mouse) and ensembl-86.

The raw_reads and sorted_reads folder will be deleted once finishing processing them, if --delete-intermediate is provided.