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biomedicalinformaticsgroup / Sargasso

Sargasso disambiguates mixed-species high-throughput sequencing data.
http://biomedicalinformaticsgroup.github.io/Sargasso/
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sambamba sort fill up the /tmp quickly when running multiple thread of sorting #62

Closed hxin closed 6 years ago

hxin commented 6 years ago

sambamba sort by default stores the intermediate files in /tmp. When running multiple instances of sambamba sort, the /tmp was filled up quickly.

Solution: adding an option to specify a PATH for the sambamba sort.