issue with space in the read name in fastq.gz file for bowtie2

biomedicalinformaticsgroup / Sargasso

Sargasso disambiguates mixed-species high-throughput sequencing data.

Other

8 stars 4 forks source link

Open hxin opened 5 years ago

hxin commented 5 years ago

check bismark --icpc option

hxin commented 5 years ago

try to repeat the bowtie error when running against chipseq data, where there is space in the read name.