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biomedicalinformaticsgroup
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Sargasso
Sargasso disambiguates mixed-species high-throughput sequencing data.
http://biomedicalinformaticsgroup.github.io/Sargasso/
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Add steps to Makefile to build STAR indices for "masking" sequences
#12
lweasel
closed
6 years ago
1
Add steps to Makefile to build STAR indices if required
#11
lweasel
closed
9 years ago
0
Allow main script to execute Makefile it has written (if so specified)
#10
lweasel
closed
8 years ago
0
Remove duplicated code in _filter_sample_reads
#9
lweasel
closed
8 years ago
2
Handle case when filtering where hits found to be out of read order
#8
lweasel
closed
8 years ago
2
Fill out usage message for all python scripts
#7
lweasel
closed
8 years ago
0
Implement main script that will take input GTF, genome FASTA, sample FASTA etc. and write Makefile
#6
lweasel
closed
8 years ago
1
Fill in option validation in filter_mapped_hits.py
#5
lweasel
closed
9 years ago
0
Fill in README
#4
lweasel
closed
7 years ago
0
Add tests directory, and git hook to run tests
#3
lweasel
closed
7 years ago
0
Fill in details in skeleton setup.py
#2
lweasel
closed
8 years ago
0
Add names to license file
#1
lweasel
closed
8 years ago
0
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