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biomystery / snATAC_pipeline_scanpy_based

A single-cell ATAC pipeline based on scanpy and clustering on most variable genomic bins. Originated from Josh@Kyle's lab.
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doublet removal #7

Open biomystery opened 5 years ago

biomystery commented 5 years ago

https://kb.10xgenomics.com/hc/en-us/articles/360005165411-Are-there-methods-for-identifying-multiplets-

https://github.com/AllonKleinLab/scrublet

https://bioconductor.org/packages/release/workflows/html/simpleSingleCell.html

biomystery commented 5 years ago

https://bioconductor.org/packages/release/workflows/vignettes/simpleSingleCell/inst/doc/doublets.html

Aaron T. L. Lun1