Parse LD files with either hg19 or hg38, but not both

biona001 / GhostKnockoffGWAS

Knockoff-based analysis of GWAS summary statistics data

MIT License

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Parse LD files with either hg19 or hg38, but not both #11

Closed biona001 closed 4 months ago

biona001 commented 5 months ago

The EUR LD files contain both pos_hg19 and pos_hg38.

But in the vcf branch we will soon support custom LD files constructed from individual level VCF data, which will only have either pos_hg19 or pos_hg38.