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biona001 / GhostKnockoffGWAS

Knockoff-based analysis of GWAS summary statistics data
MIT License
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Improve coverage #14

Closed biona001 closed 2 months ago

biona001 commented 3 months ago

We need more unit tests. We can think about doing the following:

  1. Upload a small and freely distributable VCF file into this repo
  2. Use solve_blocks() function to create .h5 formatted LD files and test its properties
  3. Download GhostKnockoffGWAS from zenodo
  4. Call GhostKnockoffGWAS on .h5 files from step 2 and test its properties