search

biona001 / GhostKnockoffGWAS

Knockoff-based analysis of GWAS summary statistics data
MIT License
8 stars 1 forks source link

very slow manhattan plots #5

Closed biona001 closed 9 months ago

biona001 commented 9 months ago

It seems like when there are a lot of discoveries (e.g. > 100), it takes a really long time (>20h) to generate the resulting manhattan plots

biona001 commented 9 months ago

It seems simply not labelling the SNPs with their names would dramatically reduce runtime (20h -> few seconds). I suppose labeling each discovery when there are >100 wouldn't really be legible anyways.