Thanks for making this! I'm excited to use the fastq-dump feature for downloading hundreds of fastq files from a single GEO repository (e.g. GSE48968)
(olga)[obotvinnik@tscc-login2 ~]$ npm install bionode-sra
npm ERR! 404 404 Not Found: bionode-sra
npm ERR! 404
npm ERR! 404 'bionode-sra' is not in the npm registry.
npm ERR! 404 You should bug the author to publish it
npm ERR! 404
npm ERR! 404 Note that you can also install from a
npm ERR! 404 tarball, folder, or http url, or git url.
npm ERR! System Linux 2.6.32-358.23.2.el6.x86_64
npm ERR! command "node" "/home/obotvinnik/bin/npm" "install" "bionode-sra"
npm ERR! cwd /home/obotvinnik
npm ERR! node -v v0.10.29
npm ERR! npm -v 1.4.21
npm ERR! code E404
npm ERR!
npm ERR! Additional logging details can be found in:
npm ERR! /home/obotvinnik/npm-debug.log
npm ERR! not ok code 0
I installed node and npm this way:
wget http://nodejs.org/dist/v0.10.29/node-v0.10.29-linux-x64.tar.gz
tar xzvf node-v0.10.29-linux-x64.tar.gz
cp node-v0.10.29-linux-x64/bin/* ~/bin
curl -L https://npmjs.org/install.sh | sh
Thanks for making this! I'm excited to use the
fastq-dump
feature for downloading hundreds of fastq files from a single GEO repository (e.g. GSE48968)I installed
node
andnpm
this way: