Is it possible to use bionode-sra to fastq-dump a whole project? For example, SRP027537 (aka GSE48968) has approximately 2500 samples and it would be amazing if it was possible to do:
I believe this was answered by email and we forgot to close this.
The answer was yes, with:
bionode-ncbi download sra SRP027537 | bionode-sra fastq-dump -
Is it possible to use
bionode-sra
tofastq-dump
a whole project? For example, SRP027537 (aka GSE48968) has approximately 2500 samples and it would be amazing if it was possible to do:And get all the fastq and metadata files.