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bionode / bionode-watermill

💧Bionode-Watermill: A (Not Yet Streaming) Workflow Engine
https://bionode.gitbooks.io/bionode-watermill/content/
MIT License
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Trinity Pipeline #37

Open thejmazz opened 8 years ago

thejmazz commented 8 years ago
  1. rna sras (ants, flies, etc.)
  2. filter
  3. transcriptome assembly (trinity -> trinity.fasta)
  4. pull out longest transcript
  5. take sra reads that contributed to assembly, map them to assembly (e.g. blast)
  6. fastq that only contains reads that contributed to this longest transcript