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bioperl / Bio-DB-NCBIHelper

BioPerl modules for accessing data from NCBI
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NCBI query fixes #4

Closed cjfields closed 4 years ago

cjfields commented 5 years ago

This is a placeholder issue for now. Fixes were added in 727f3a5890ec79c128492b2cf461e1379799b265, but the release of a new version is blocking until a new BioPerl release is made that includes https://github.com/bioperl/bioperl-live/commit/2ab201ffa90e0a51b957b994b300222d6aa72373.

carandraug commented 5 years ago

Adding a new property to Bio::DB::Query::WebQuery seems worth noting on the Changes file. Can you please add such note on that bioperl-live Changes file?

Also, I guess this means that the requirement for that upcoming version should be noted somewhere.

cjfields commented 5 years ago

@carandraug Yep that should be clarified, I can add this. To be honest, on the surface there appears to be a lot of overlap with Bio::DB::Query::WebQuery and Bio::WebAgent functionality, it might be worth evaluating what modules require these.

cjfields commented 4 years ago

Fixed in the latest BioPerl release (v1.7.7) and here.