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Legacy tickets migrated from the OBF Redmine issue tracker: http://redmine.open-bio.org
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FASTQ indexing borked with qual strings starting with '@' #118

Open cjfields opened 8 years ago

cjfields commented 8 years ago

Author Name: Chris Fields (@cjfields) Original Redmine Issue: 3277, https://redmine.open-bio.org/issues/3277 Original Date: 2011-08-03 Original Assignee: Chris Fields

FASTQ indexing (via Bio::Index::Fastq) doesn’t handle quality strings starting with ‘@’. Below is a simple example:

@22PLN:2:2093:5050:1232/1
ACGGATGAGGACTTTGCTGGAGGCCTCGATTTCAGAGCCCTTAACACATTCTACATCGGAGGCCATGATTTTCTTGTGGTGAGAAGACAAAGCCAGCTGT
+
@###################################################################################################
cjfields commented 8 years ago

Original Redmine Comment Author Name: Chris Fields Original Date: 2011-08-03T16:37:48Z

Issue originally reported on the mail list.