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bioperl / bioperl-live-redmine

Legacy tickets migrated from the OBF Redmine issue tracker: http://redmine.open-bio.org
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PAML parse_seqs misses the first sequence in the mlc file #135

Open cjfields opened 8 years ago

cjfields commented 8 years ago

Author Name: Daisie Huang (@daisieh) Original Redmine Issue: 3365, https://redmine.open-bio.org/issues/3365 Original Date: 2012-06-15 Original Assignee: Bioperl Guts

PAML parse_seqs doesn’t get called until after the first sequence has already been read in, meaning that the first sequence gets dropped from the otus array.

cjfields commented 8 years ago

Original Redmine Comment Author Name: Daisie Huang Original Date: 2012-06-18T19:03:47Z

This test script should run correctly after the patch.

cjfields commented 8 years ago

Original Redmine Comment Author Name: Daisie Huang Original Date: 2012-06-18T19:12:16Z

Oops, wrong version of test script.