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bioperl / bioperl-live-redmine

Legacy tickets migrated from the OBF Redmine issue tracker: http://redmine.open-bio.org
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bp_genbank2gff3.pl doesn't calculate CDS phases #23

Open cjfields opened 9 years ago

cjfields commented 9 years ago

Author Name: Scott Cain (@scottcain) Original Redmine Issue: 2322, https://redmine.open-bio.org/issues/2322 Original Date: 2007-06-19 Original Assignee: Scott Cain

The GFF3 specification states that CDS phases (column 8 in a GFF file) are required for all CDS features, however, the genbank conversion script does not calculate them.

cjfields commented 9 years ago

Original Redmine Comment Author Name: Chris Fields Original Date: 2007-10-23T13:09:43Z

Re: the GFF3 code audit…not sure if we plan on fixing this or incorporate the code into a more flexible module structure.

cjfields commented 9 years ago

Original Redmine Comment Author Name: Chris Fields Original Date: 2008-01-31T11:55:02Z

Pushing to the 1.7 series.