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Legacy tickets migrated from the OBF Redmine issue tracker: http://redmine.open-bio.org
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Target tag format in bp_search2gff.pl #32

Open cjfields opened 8 years ago

cjfields commented 8 years ago

Author Name: Eric Just (Eric Just) Original Redmine Issue: 2377, https://redmine.open-bio.org/issues/2377 Original Date: 2007-10-05 Original Assignee: Bioperl Guts

Currently the Target tag gets written as: Target=Sequence:SOME_ID

I propose: Target=SOME_ID

Or at least an option to generate it in this way.

Thanks!

cjfields commented 8 years ago

Original Redmine Comment Author Name: Chris Fields Original Date: 2007-10-23T12:27:28Z

It is very likely we will come up with new GFF-related tools (modules) to handle Bio::SearchIO-derived data, primarily in relation to getting BioPerl producing GFF3-relevant code (the idea being we make it as flexible as possible). When that occurs, we’ll probably deprecate much of the older GFF-related code in favor of the new way.

As such, we’re probably not going fix the script in question (bp_search2gff.pl) for this bug or bug 2376 but we’ll leave them open as a request for change to incorporate into any new tools.

cjfields commented 8 years ago

Original Redmine Comment Author Name: Chris Fields Original Date: 2008-02-12T10:57:12Z

All GFF-related functionality needs an overhaul (per last year’s GMOD meeting), so GFF-related errors are being pushed to the 1.7 series. It’s possible these may be addressed sooner dep. on priorities.