search

bioperl / bioperl-live-redmine

Legacy tickets migrated from the OBF Redmine issue tracker: http://redmine.open-bio.org
0 stars 0 forks source link

ProtPars.t passing but with lots of warnings #68

Open cjfields opened 8 years ago

cjfields commented 8 years ago

Author Name: Adam Witney (Adam Witney) Original Redmine Issue: 2985, https://redmine.open-bio.org/issues/2985 Original Date: 2010-01-13 Original Assignee: Bioperl Guts

version in trunk was passing but with lots of these warnings:

Use of uninitialized value in string comparison (cmp) at t/ProtPars.t line 81

due to presence of internal nodes with no id’s

attached patch fixes this… although I am not experienced enough in this code to know if it is correct.

cjfields commented 8 years ago

Original Redmine Comment Author Name: Adam Witney Original Date: 2010-01-13T09:18:07Z

Created an attachment (id=1424) Fixes multiple warnings when test run

cjfields commented 8 years ago

Original Redmine Comment Author Name: Jason Stajich Original Date: 2011-03-27T23:15:20Z

Checked in a few changes but this still needs work as the TreeIO parsing fails when there is the trailing [SCORE] in the ProtPars tree result.