bioperl / bioperl-live

Core BioPerl 1.x code
http://bioperl.org
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CI: test with minimum, median, and latest Perl versions #378

Closed zmughal closed 1 year ago

zmughal commented 1 year ago

This is per discussion at:

Uses minimum (set at 5.12), median, and latest versions.


Currently 5.12 is broken with the error:

Error: Can't locate object method "new" via package "Bio::Search::HSP::GenericHSP::SUPER" at /home/runner/work/bioperl-live/bioperl-live/blib/lib/Bio/Search/HSP/GenericHSP.pm line 182, <GEN1> line 2564.
# Looks like your test exited with 255 just after 7.
t/SearchIO/Tiling.t ................. 
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 1134/1141 subtests 

[...]

Test Summary Report
-------------------
t/SearchIO/Tiling.t               (Wstat: 65280 (exited 255) Tests: 7 Failed: 0)
  Non-zero exit status: 255
  Parse errors: Bad plan.  You planned 1141 tests but ran 7.
Files=211, Tests=13707, 61 wallclock secs ( 1.18 usr  0.32 sys + 53.01 cusr  6.47 csys = 60.98 CPU)
Result: FAIL
Failed 1/211 test programs. 0/13707 subtests failed.

This PR should not be merged until that is fixed.


Edit: this is now fixed by https://github.com/bioperl/bioperl-live/pull/380.