bioperl / bioperl-live

Core BioPerl 1.x code
http://bioperl.org
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New warnings with perl 5.41.x #394

Open eserte opened 1 month ago

eserte commented 1 month ago

With perl 5.41.4 I see the following new (non-fatal) warnings while running the test suite:

Attempt to call undefined import method with arguments ("dumpValue") via package "Dumpvalue" (Perhaps you forgot to load the package?) at /home/cpansand/.cpan/build/2024101810/BioPerl-1.7.8-1/blib/lib/Bio/Tools/Alignment/Consed.pm line 114.
Attempt to call undefined import method with arguments ("new") via package "Bio::SearchIO" (Perhaps you forgot to load the package?) at bin/bp_find-blast-matches line 120.Attempt to call undefined import method with arguments ("new") via package "Bio::Seq" (Perhaps you forgot to load the package?) at bin/bp_find-blast-matches line 121.Attempt to call undefined import method with arguments ("new") via package "Bio::SeqIO" (Perhaps you forgot to load the package?) at bin/bp_find-blast-matches line 122. at t/00-compile.t line 596, <GEN1916> line 4.
t/00-compile.t ...................... ok
cjfields commented 1 week ago

Thx @eserte . Since this is a warning and from a perl developer release (odd-number versioning) it's not a huge issue at the moment, but worth noting.

eserte commented 1 week ago

I checked the test reports on my disk: the same warnings already happen in stable perl 5.40.0. perl 5.38.x is not affected.