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biopragmatics / biolookup

🔍 The Biolookup Service retrieves metadata and ontological information about biomedical entities.
http://biolookup.io
MIT License
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Famplex lookup fails in current version #12

Open bgyori opened 2 years ago

bgyori commented 2 years ago

The request http://biolookup.io/api/lookup/fplx:ERK used to return a valid response that contained e.g., ERK as the name but the lookup in the currently deployed version fails:

{
  "identifier": "ERK",
  "message": "Could not look up identifier",
  "prefix": "fplx",
  "providers": {
    "biolookup": "http://biolookup.io/fplx:ERK",
    "bioregistry": "https://bioregistry.io/fplx:ERK",
    "default": "https://sorgerlab.github.io/famplex/ERK",
    "miriam": "https://identifiers.org/fplx:ERK",
    "n2t": "https://n2t.net/fplx:ERK"
  },
  "query": "fplx:ERK",
  "success": false
}
cthoyt commented 2 years ago

Somehow famplex didn't make it into the build - there are no entries at all loaded (c.f. http://biolookup.io/statistics)... not sure how that happened, but will look into a new deployment. Unfortunately this will be tricky this week with my slow internet, so I will see how far I can get in tracking down why it happened in the first place