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biopragmatics / bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.
https://bioregistry.io
MIT License
107 stars 47 forks source link

Ingest BioPortal PURLs from `prefixmaps` #1099

Open cthoyt opened 2 months ago

cthoyt commented 2 months ago

This PR performs QC on the curated URI prefixes in https://github.com/linkml/prefixmaps/blob/main/src/prefixmaps/data/bioportal.curated.yaml and ingests a high-quality/non-redundant subset of them. This still requires curation to add in important context for each

codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 0% with 41 lines in your changes are missing coverage. Please review.

Project coverage is 40.26%. Comparing base (0b0f8b9) to head (bc538ba). Report is 38 commits behind head on main.

:exclamation: Current head bc538ba differs from pull request most recent head 4723eca. Consider uploading reports for the commit 4723eca to get more accurate results

Files Patch % Lines
...ioregistry/curation/ingest_prefixmaps_bioportal.py 0.00% 41 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #1099 +/- ## ========================================== - Coverage 40.44% 40.26% -0.18% ========================================== Files 150 151 +1 Lines 8340 8384 +44 Branches 1637 1650 +13 ========================================== + Hits 3373 3376 +3 - Misses 4776 4817 +41 Partials 191 191 ```

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