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biopragmatics / bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.
https://bioregistry.io
MIT License
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Loosen fairsharing regex #264

Open cmungall opened 2 years ago

cmungall commented 2 years ago

http://bioregistry.io/registry/fairsharing

regex: ^fairsharing:bsg-[dscp]?\d{6}$

This works e.g. for https://fairsharing.org/bsg-s001618/

but this means that entries like this can't be CURIEfied https://fairsharing.org/biodbcore-000456/

There are also entries in fairsharing with IDs like this: https://fairsharing.org/FAIRsharing.jptb1m

Tangential: may want to register bioregistry on fairsharing https://beta.fairsharing.org/search?q=bioregistry

cthoyt commented 2 years ago

I've just tackled aligning the Bioregistry with FAIRsharing in #267 - it looks like the bsg and biodbcore identifiers have been retired for their upcoming release. I've yet to encounter any resource that actually uses FAIRsharing, so I'm not sure what the best solution for providing backwards compatibility would be.

Thanks for the reminder, Bioregistry now has a page on https://beta.fairsharing.org/3680

cthoyt commented 2 years ago

Closed in #632

cthoyt commented 2 years ago

Though maybe I missed the biodbcore stuff