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biopragmatics / bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.
https://bioregistry.io
MIT License
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Update OBO in OWL #973

Closed cthoyt closed 9 months ago

cthoyt commented 10 months ago

This PR updates the OBO in OWL record (see current record at https://bioregistry.io/oboinowl) in the following ways:

  1. Uses pseudo-PURLs for OBO and OWL download that correspond to the URIs
  2. Add @kltm as the contact person. There's still some ambiguity as to how this file is maintained, but since the URIs point to the GO repo, I think this is probably a good call for now
  3. Adds a loose pattern
  4. Adds additional examples

@matentzn @kltm I would love to have one of you contribute a more detailed description

See related recent discussions:

  1. https://github.com/geneontology/go-site/issues/2157
  2. https://github.com/information-artifact-ontology/ontology-metadata/issues/157
codecov[bot] commented 10 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (04a19ae) 40.93% compared to head (ff6cad0) 40.93%. Report is 1 commits behind head on main.

:exclamation: Current head ff6cad0 differs from pull request most recent head 1a88bb0. Consider uploading reports for the commit 1a88bb0 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #973 +/- ## ======================================= Coverage 40.93% 40.93% ======================================= Files 138 138 Lines 7905 7905 Branches 1841 1841 ======================================= Hits 3236 3236 Misses 4467 4467 Partials 202 202 ```

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kltm commented 10 months ago

I would defer to @cmungall and @balhoff here.