Closed cmungall closed 2 years ago
also: should link be is_a? If so it would be good to have the gene families in the .obo, or an easy way to obtain the .obo so we can make something that links up
note that is_a/subClassOf is a very powerful commitments. it means here that you would be committing to the hgnc gene family IDs being classifies under SO:gene which may not be HGNC's intent. It also effectively prohibits a class "gene family" unless one is happy with individual genes classified there (unless gene family is a metaclass)
I agree, for ontology stuff this is very heavy. What relation might be better?
Will fix that identifiers.org issue ASAP
member of from RO seems appropriate
hgnc.genefamily
has been deprecated in favor of hgnc.genegroup
, so I updated PyOBO to reflect this. I also changed the relationship to be RO member of in 57c99e0. There are new exports in this repo (including one with the hgnc gene group hierarchy)
https://bioregistry.io/hgnc.genefamily:1373 --> https://registry.identifiers.org/deprecation/resources/MIR:00100671/1373
with a 404 "go home" message :-(