biopragmatics / pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
https://pyobo.readthedocs.io
MIT License
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Curate and integrate further MeSH mappings #31

Open bgyori opened 4 years ago

bgyori commented 4 years ago

There is another table in Gilda: https://github.com/indralab/gilda/blob/master/gilda/resources/mesh_ambig_mappings.tsv which contains mappings that the automated lexicalization-based mapping couldn't definitively figure out and could be manually curated. For instance between

MESH | D000475 | Alkenes | CHEBI | CHEBI:32878 | alkene
MESH | D000475 | Alkenes | CHEBI | CHEBI:33641 | olefin

to a human it's obvious that the first one can be applied.

cthoyt commented 4 years ago

Also https://github.com/obophenotype/chiro/pull/17 / https://github.com/obophenotype/chiro/blob/d716b02b3d13e1354f220098af7489eb6a512bdd/src/ontology/mappings/mesh-chebi-role-mappings-unique.tsv

** needs curation