biopython / biopython.github.io

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[feature] Add local sequence-logo drawer for meme seqs #200

Open Kiri2002 opened 1 year ago

Kiri2002 commented 1 year ago

according to doc

If we have internet access, we can create a weblogo: m.weblogo("mymotif.png") We should get our logo saved as a PNG in the specified file.

biopython use web to draw logo. But now there are many good local drawer in python, for example:

pyseqlogo image

Logomaker, it's paper image

so maybe we can pick some merge to biopython? Benefit a lot .

peterjc commented 1 year ago

Perhaps easier to add examples using these to our documentation, or even add an alternative method to our motif code to call these libraries?