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biosails / BioX-Workflow-Command

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Add sample sets #45

Open jerowe opened 6 years ago

jerowe commented 6 years ago

Sometimes a sample does not exactly the specified structure, or we have multiple indirs.

Introduce sample sets, and/or multiple indirs.

- sample_set:
   - set:
       - indir: 'dataset/1'
        - sample_rule: '(Sample_.*).fastq
    - set: 
       - indir: 'dataset/2'
       - sample_rule: '(Sample_.*).fastq