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biosails / pheniqs

Fast and accurate sequence demultiplexing
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--help bug #17

Closed dleopold closed 6 years ago

dleopold commented 6 years ago

I just updated my pheniqs install and have noticed a strange bug. When i run pheniqs mux --help the normal help is displayed. However, if I do it a second time the help does not display and the terminal seems to be stuck in a loop of printing blank lines until I force quit. This continues every subsequent time I try to pull up the help. This first happened to me in gnome-terminal but I get the same behavior using xterm (e.g. it only worked the first time). The bug does not seem to affect the normal functioning of pheniqs (e.g. I can still run a demultiplexing command and it works properly). The bug persisted through multiple uninstall / reinstall attempts. I am not experiencing this behavior with any other command line programs. I installed using miniconda and I am running Linux mint 18.1.

moonwatcher commented 6 years ago

Hi Leopold, Sorry for the late reply and thanks for the bug report :) fixed https://github.com/biosails/pheniqs/commit/c0254c8b54d7a881f58cb107c4e94ae5b1997122

Hope you find Pheniqs useful. Notice the zsh completion support, it really makes cli use easier.

L.

moonwatcher commented 6 years ago

Dear Leopold, Thank you for outlining this bug. It has been fixed and was the last change to make it to 2.0.6. I am closing this ticket now but please let me know if you still have any issues.

L.