Hello,
In my config file I tried to set up Sample decoding according to all of the examples I have seen. When I validate the file, after the Output transform section, there should be a "Sample decoding" section, but for me there is a "Mutliplex decoding" (yes, it says Mutliplex not Multiplex, I wonder if anyone has ever noticed that :) ).
My first step in troubleshooting was to try an example file instead of my own file. I found in another issue (#32) you posted a corrected config file as well as the correct validation output. The validation output you posted correctly shows a "Sample decoding" section, with info for each barcode and output. However, when I validate the same file, I see a "Mutliplex decoding" section instead, with very limited output and no barcode info and file output info.
I used the same code, where original.json is copied from your response in #32
pheniqs mux --config original.json -F fastq --compression gz --validate
Hello, In my config file I tried to set up Sample decoding according to all of the examples I have seen. When I validate the file, after the Output transform section, there should be a "Sample decoding" section, but for me there is a "Mutliplex decoding" (yes, it says Mutliplex not Multiplex, I wonder if anyone has ever noticed that :) ).
My first step in troubleshooting was to try an example file instead of my own file. I found in another issue (#32) you posted a corrected config file as well as the correct validation output. The validation output you posted correctly shows a "Sample decoding" section, with info for each barcode and output. However, when I validate the same file, I see a "Mutliplex decoding" section instead, with very limited output and no barcode info and file output info.
I used the same code, where original.json is copied from your response in #32 pheniqs mux --config original.json -F fastq --compression gz --validate
I'm using a conda install of pheniqs 2.0.4
Any ideas? Thanks for your help. Cliff