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biosails / pheniqs

Fast and accurate sequence demultiplexing
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Validate failed #5

Closed eyalbenda closed 6 years ago

eyalbenda commented 6 years ago

My JSON configuration isn't being parsed, and the output doesn't provide information for figuring out what's wrong. I've tried to model it as best I could on the website example to get it to work. the python JSON validation shows no errors. My setting is the following: I have two fastq files from illumina paired end sequencing. Read 1 contains the sequenced DNA, and read 2 contains three ranges of multiplex barcodes, and one range of molecular barcode. Any help with figuring out what I'm doing wrong would be great!

The config file (changed extension to txt to upload): pheniqsConf.txt

moonwatcher commented 6 years ago

Hi eyal, sorry I didn’t get back to you earlier, I didn’t notice the ticket :(

You seem to encode every value as an element in an array... take a look at the manual for the example and compare, I think it will pop right out.