biosemantics / micropie2

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extraneous values for pH characters being picked up, example 4 #81

Closed carrineblank closed 7 years ago

carrineblank commented 7 years ago

For the text "Cells are Gram-positive, non-sporulating, straight rods measuring 0.3–0.9 x 1.8–7.2 µm, occurring singly, in pairs or in short chains. Motile with peritrichous flagella. Deep colonies in 2.5% NaCl GYPF agar medium are pale yellow, opaque and lenticular, with diameters of 1.0–2.0 mm after 3 days at 30 ˚C. Surface colonies are round, convex, entire, pale yellow and transparent, with diameters of 0.5–1.0 mm after 3 days at 30 ˚C. Aerotolerant. Grows evenly throughout a column of semi-solid agar medium. Catalase- and oxidase-negative. Quinones are not detected. Negative for nitrate reduction, gelatin liquefaction and production of ammonia from L-arginine. Slightly halophilic and highly halotolerant; the optimum NaCl concentration for growth is 0.5–1.5% (w/v) with a range of 0.0–17.0% (w/v). Alkaliphilic; the optimum pH for growth is 9.0–9.5, with a range of 7.0–11.0. Growth occurs between 10 and 47.5 ˚C, with an optimum temperature of 37 ˚C. Lactic acid is the major fermentation product from D-glucose; other products are formate, acetate and ethanol with a molar ratio of approximately 2:1:1, without gas formation. Lactate yield decreases at higher pH of the fermentation medium (analysed for the type strain). D-Glucose is metabolized aerobically to acetate in addition to lactate (analysed for the type strain). The fermentation profile of carbohydrates, sugar alcohols and related carbon compounds is given in Table 2. Not inhibited by chloramphenicol or kanamycin; inhibited by ampicillin and trimethoprim. The peptidoglycan is A4β, Orn–D-Asp type. The major cellular fatty acids are C16:0, C16:1ω9c and C18:1ω9c (oleic acid). The G+C content of the DNA of strain T143-1-1T is 42.2 mol%. The type strain is T143-1-1T (=DSM 19183T=NBRC 103242T=NRIC 0719T), which was isolated from decaying seagrass collected at the seashore of Ko Chang (Chang Island), Trat province, Thailand. "

MicroPIE is picking up "7.0|2.5% NaCl" as the pH min. The correct value should be 7.0. MicroPIE is picking up "11.0|3 days" as the pH max. The correct value should just be 11.0.

danveno commented 7 years ago

The same as #84