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bioshed_atlas
GNU General Public License v3.0
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make video tutorial of atlas
#21
bioshed
opened
1 year ago
0
WDL support
#20
bioshed
opened
1 year ago
0
bioshed search gdc breast cancer rna-seq => “breast_breast” as tissue
#19
bioshed
opened
1 year ago
0
setup HTTPS download if AWS is not setup
#18
bioshed
closed
1 year ago
0
work on full annotation output files
#17
bioshed
closed
1 year ago
0
atlas_encode and atlas_gdc: manual tests
#16
bioshed
opened
1 year ago
0
error - Currently supported downloads: encode, nbci, local on download()
#15
bioshed
closed
1 year ago
1
this should return something: bioshed search gdc breast cancer variant call
#14
bioshed
closed
1 year ago
1
bioshed search gdc / encode --filetype needs to work
#13
bioshed
closed
1 year ago
1
download atlas_encode and atlas_gdc: Clean up documentation
#12
bioshed
closed
1 year ago
0
bioshed search tcga
#11
bioshed
closed
1 year ago
7
Look at other public repositories on AWS open data registry
#10
bioshed
opened
1 year ago
0
--update for only downloading new files
#9
bioshed
closed
1 year ago
0
[TODO] figure out local search
#8
bioshed
opened
1 year ago
0
download encode --list (to list files)
#7
bioshed
closed
1 year ago
0
bioshed search ncbi (v1)
#6
bioshed
opened
1 year ago
3
download encode
#5
bioshed
closed
1 year ago
0
$ bioshed search encode (v1)
#4
bioshed
closed
1 year ago
3
ENCODE: search by cell type, assay type etc...
#3
bioshed
closed
1 year ago
0
ENCODE: get_files_from_experiment()
#2
bioshed
closed
1 year ago
0
getRequestJSON() - quick_utils()
#1
bioshed
closed
1 year ago
0